MANIFEST.in
README.md
setup.py
abacat/__init__.py
abacat/abacat_helper.py
abacat/config.py
abacat/dendrogram.py
abacat/genome.py
abacat/prodigal.py
abacat.egg-info/PKG-INFO
abacat.egg-info/SOURCES.txt
abacat.egg-info/dependency_links.txt
abacat.egg-info/requires.txt
abacat.egg-info/top_level.txt
abacat/data/__init__.py
abacat/data/__pycache__/__init__.cpython-36.pyc
abacat/data/__pycache__/__init__.cpython-37.pyc
abacat/data/db/megares/megares_annotations_v1.01.csv
abacat/data/db/megares/megares_database_v1.01.fasta
abacat/data/db/megares/megares_database_v1.01.fasta.nhr
abacat/data/db/megares/megares_database_v1.01.fasta.nin
abacat/data/db/megares/megares_database_v1.01.fasta.nsq
abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv
abacat/data/db/phenotyping/pathways.json
abacat/data/db/phenotyping/phenotyping.fasta
abacat/data/db/phenotyping/phenotyping.fasta.phr
abacat/data/db/phenotyping/phenotyping.fasta.pin
abacat/data/db/phenotyping/phenotyping.fasta.psq
abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna
abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna
abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna
abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna
abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna
abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_proteins.faa
abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna
abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_cds.gbk
abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_genes.fna
abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_proteins.faa
abacat/data/genomes/key_file.tsv
abacat/deprecated/__init__.py
abacat/deprecated/prokka.py
abacat/deprecated/prokka_parser.py
abacat/deprecated/renamer.py
abacat/deprecated/reports.py
abacat/deprecated/genome_fetcher/__init__.py
abacat/deprecated/genome_fetcher/config.py
abacat/deprecated/genome_fetcher/extract_accession_id.py
abacat/deprecated/genome_fetcher/genfetch.py
abacat/deprecated/genome_fetcher/genome_fetcher.py
abacat/deprecated/genome_fetcher/parallel_genfet.py
abacat/pipelines/__init__.py
abacat/pipelines/annotate.py
abacat/pipelines/phenotyping.py
tests/__init__.py
tests/test_dendrogram.py
tests/test_genome.py