LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abutils/__init__.py
abutils/io.py
abutils/pl.py
abutils/tl.py
abutils/version.py
abutils.egg-info/PKG-INFO
abutils.egg-info/SOURCES.txt
abutils.egg-info/dependency_links.txt
abutils.egg-info/requires.txt
abutils.egg-info/top_level.txt
abutils/bin/cdhit_darwin
abutils/bin/cdhit_linux
abutils/bin/mafft_darwin
abutils/bin/mafft_linux
abutils/bin/mmseqs_darwin
abutils/bin/mmseqs_linux
abutils/bin/muscle_darwin
abutils/bin/muscle_linux
abutils/bin/vsearch_darwin
abutils/bin/vsearch_linux
abutils/core/__init__.py
abutils/core/lineage.py
abutils/core/pair.py
abutils/core/sequence.py
abutils/plots/__init__.py
abutils/plots/bar.py
abutils/plots/base.py
abutils/plots/lineage.py
abutils/plots/scatter.py
abutils/plots/summary.py
abutils/tenx/__init__.py
abutils/tenx/batch_cellranger.py
abutils/tenx/features.py
abutils/tenx/io.py
abutils/tenx/pl.py
abutils/tenx/tl.py
abutils/utils/__init__.py
abutils/utils/alignment.py
abutils/utils/cluster.py
abutils/utils/codons.py
abutils/utils/color.py
abutils/utils/convert.py
abutils/utils/database.py
abutils/utils/decorators.py
abutils/utils/germlines.py
abutils/utils/jobs.py
abutils/utils/log.py
abutils/utils/mongodb.py
abutils/utils/phylogeny.py
abutils/utils/pipeline.py
abutils/utils/progbar.py
abutils/utils/s3.py
abutils/utils/seqio.py
abutils/utils/ssh_tunnel.py
abutils/utils/utilities.py
abutils/utils/matrices/blosum62
abutils/utils/matrices/match1mismatch0
abutils/utils/matrices/match3mismatch2
bin/batch_cellranger
docs/doc_requirements.txt